PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23232
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 92aa    MW: 10086.1 Da    PI: 7.3436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23232genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-063961223
                               EETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                               kC+ C k+F++ s L+ H+   H
  Tp57577_TGAC_v2_mRNA23232 39 KCEVCAKTFRNESALRDHMAEkH 61
                               7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1050.102.9E-62269IPR026939At2g23090-like
SuperFamilySSF576672.56E-63471No hitNo description
PROSITE profilePS5015710.5333866IPR007087Zinc finger, C2H2
SMARTSM003555.2E-43861IPR015880Zinc finger, C2H2-like
PfamPF121711.4E-54060IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002804061IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MAPTTTPTAT SNDNSSNKDF DDTKSGSSNI PDAGAKNVKC EVCAKTFRNE SALRDHMAEK  60
HGDKKCFKCN LNFDTDQQRQ EHMDRGICSK N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23232
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3KUU21e-60A0A2K3KUU2_TRIPR; Gastrula zinc finger-like protein