PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA23250

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 245aa MW: 28317.2 Da PI: 6.3736

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA23250	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.8	1.5e-06	92	137	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er RR+r +++ + L ++lPk +K + ++++ A + I+ Lq Tp57577_TGAC_v2_mRNA23250 92 HMISERMRRQRQRQCCSDLHSVLPKG-----TKTDNNSVVQTAAKEIQRLQ 137 7899********************97.....79999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.677	87	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-10	91	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-7	91	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0043	93	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDPFYPENLL GEVFFDEPLT SNQSDYAMAQ QQQPCPTQNP SAFVQYRDQP KISFLEENSN 60 TMNKRMVAFL KKSLPLEKSK VAECERERGF KHMISERMRR QRQRQCCSDL HSVLPKGTKT 120 DNNSVVQTAA KEIQRLQGYK DELERKNFVL EENVEVIERR KPHYLRVPYD ATSGIISSMI 180 ETLKLLKSNG VETTSIKSKF SQQELFAFLE IETEIAETVV DNIADEIDWK LQHKIPEGSH 240 KQII*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA23250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013466953.1	1e-110	transcription factor bHLH92 isoform X1
TrEMBL	A0A072VG47	1e-109	A0A072VG47_MEDTR; Basic helix loop helix protein, putative
STRING	XP_004498014.1	2e-96	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12572	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA23250