PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23293
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 374aa    MW: 43108.3 Da    PI: 9.1139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23293genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00132446123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y C +Cg s s k + ++Hi++H
  Tp57577_TGAC_v2_mRNA23293 24 YFCDYCGISRSKKTLITSHINSH 46
                               78********************6 PP
2zf-C2H219.23.3e-066990223
                               EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                               +C+ Cg sF+ + +L +H+++H
  Tp57577_TGAC_v2_mRNA23293 69 TCKECGASFRKPAYLLQHMQSH 90
                               6*******************99 PP
3zf-C2H2156.9e-0596120123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                y C+   C  s++rk++L+rH+  H
  Tp57577_TGAC_v2_mRNA23293  96 YICTfdGCQVSYRRKDHLNRHLLQH 120
                                899999***************9887 PP
4zf-C2H212.60.00042125150123
                                EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                +kCp  +C++ Fs   n +rH +  H
  Tp57577_TGAC_v2_mRNA23293 125 FKCPieNCNRDFSFEGNVTRHVKQfH 150
                                89*******************99877 PP
5zf-C2H219.52.7e-06166190123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                ++Cp   Cgk+F+  s L++H  +H
  Tp57577_TGAC_v2_mRNA23293 166 HVCPeiGCGKVFKFASKLEKHKDSH 190
                                79*******************9988 PP
6zf-C2H214.88.4e-05256281123
                                EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                + C    C+ +Fs+ksnL +H +  H
  Tp57577_TGAC_v2_mRNA23293 256 FDCDykGCSCTFSSKSNLSKHVKAiH 281
                                5688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355152446IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-76889IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.2776895IPR007087Zinc finger, C2H2
SMARTSM003550.00796890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576675.76E-1182124No hitNo description
Gene3DG3DSA:3.30.160.607.7E-1390123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.24296125IPR007087Zinc finger, C2H2
SMARTSM003550.002496120IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098120IPR007087Zinc finger, C2H2
SuperFamilySSF576673.97E-5123152No hitNo description
Gene3DG3DSA:3.30.160.605.2E-5124148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.533125155IPR007087Zinc finger, C2H2
SMARTSM003550.11125150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-7163190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.097166195IPR007087Zinc finger, C2H2
SMARTSM003550.0096166190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168190IPR007087Zinc finger, C2H2
SMARTSM003558.8198223IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280200223IPR007087Zinc finger, C2H2
SMARTSM0035546226247IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.14E-7241294No hitNo description
PROSITE profilePS5015712.736256286IPR007087Zinc finger, C2H2
SMARTSM003550.005256281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280258281IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5258285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.2E-5286309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538287313IPR007087Zinc finger, C2H2
SMARTSM003552.3287313IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280289313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGDKEMADSF ESNKRPIFRD IRRYFCDYCG ISRSKKTLIT SHINSHHQVE VEKAGLQRDQ  60
EAQGIKSNTC KECGASFRKP AYLLQHMQSH SLERPYICTF DGCQVSYRRK DHLNRHLLQH  120
EGKKFKCPIE NCNRDFSFEG NVTRHVKQFH NKDSSTSIDV KIQKQHVCPE IGCGKVFKFA  180
SKLEKHKDSH VKLESIETVC LYPGCMKHFT SIQCLRAHTK SCHQYVTCET CGEKQLEKNI  240
KRHLGKHENG SSSEVFDCDY KGCSCTFSSK SNLSKHVKAI HLQDKPYMCS FPDCGMKFAY  300
KHVRDNHEKS GSHVFTLGDF EETDEQFRSR NRGGRKRKCP TVEMLIRKRV APPTQLEVLM  360
KGIDIKCGQF VHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A5e-157222019157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D5e-157222019157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23293
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1249541e-106AC124954.14 Medicago truncatula chromosome 8 clone mth2-10g9, complete sequence.
GenBankAC1524031e-106AC152403.17 Medicago truncatula chromosome 8 clone mth2-29f13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028770042.10.0transcription factor IIIA-like isoform X1
RefseqXP_028782127.10.0transcription factor IIIA-like isoform X1
RefseqXP_028782128.10.0transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-136TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2K3MRG10.0A0A2K3MRG1_TRIPR; Transcription factor IIIA-like protein
STRINGAET023670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-139transcription factor IIIA