PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23716
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 241aa    MW: 26771.2 Da    PI: 8.896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23716genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-133784254
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               +++h e+ErrRR+riN  ++ Lr+llP+      +K +Ka+ L ++v+++k L
  Tp57577_TGAC_v2_mRNA23716 37 CKSHREAERRRRQRINAHLSSLRSLLPNT-----TKSDKASLLAEVVHHVKRL 84
                               789*************************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.5863584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-113784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-133897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-133998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-114190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.61E-5140216No hitNo description
Gene3DG3DSA:3.30.70.2607.5E-6141212No hitNo description
CDDcd048732.01E-4144215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLPPLRRFYG FESWLDKDSE KINGEKSKSE RKSREACKSH REAERRRRQR INAHLSSLRS  60
LLPNTTKSDK ASLLAEVVHH VKRLRKEADD VANRNDESSS SCSGEPGSVD STEVGETWPF  120
PGESDEATVS YCGGEEGEPK RMKVTVCCED RPGLNRDLTK AIRSVRAIPI RAEMMTVGGR  180
TKSVMVVECC KGKGGGDGRE EKEVEALERG LKAVIENRAF VDSRMGPFML GLKRARESNS  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23716
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615282.11e-119transcription factor bHLH30
TrEMBLA0A2K3M0L91e-172A0A2K3M0L9_TRIPR; Transcription factor bHLH30-like protein
STRINGAES982401e-118(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-28bHLH family protein