PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA23860

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 165aa MW: 18968.5 Da PI: 10.3105

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA23860	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.9e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F+ L H+r+H Tp57577_TGAC_v2_mRNA23860 80 HECSICGQEFKLGQALGGHMRRH 102 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.77E-6	77	104	No hit	No description
Pfam	PF13912	1.9E-9	80	103	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.806	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MKLCFTNIKH SHVQAYNTHD EETETKRRKR EHRFSNKSNA TLFSSYPTKQ KNIIFSXXXX 60 XIDSEEAKKV NINNNKPKMH ECSICGQEFK LGQALGGHMR RHRINNEGSS INYQVITKSS 120 PVLKRSNSKR IIMCLELDLN LTPLENDLKL LFGNKAPRVD LSLF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA23860

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013468306.1	1e-58	zinc finger protein ZAT11
Swissprot	Q9SLD4	4e-20	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A072VLR4	3e-57	A0A072VLR4_MEDTR; C2H2 type zinc finger transcription factor family protein
TrEMBL	A0A396JNK8	3e-57	A0A396JNK8_MEDTR; Putative transcription factor C2H2 family
STRING	XP_004494993.1	6e-44	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	1e-22	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA23860