PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23927
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 232aa    MW: 26790.9 Da    PI: 9.7559
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23927genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.5e-2344133290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                fY +YAk  GF vrk+   ++  +g i++r+f C++eg+r++++ +  +++r +r++tr++C+a+l+++ ++ + +w+vt++e 
  Tp57577_TGAC_v2_mRNA23927  44 FYVKYAKCNGFVVRKDVVVRN-VSGMIITRRFLCNREGERDQKHLTrVDRKRDHRVVTRINCEAHLRIHYNEeRLRWVVTSFEV 126
                                9***************99998.8899***************9998856788889*****************9999********* PP

                       FAR1  84 eHnHela 90 
                                 HnHel 
  Tp57577_TGAC_v2_mRNA23927 127 SHNHELI 133
                                *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-2144133IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MYLMIALRNS DSVVIGGRFV RINIMTVDDI EGLDFRREKD AYGFYVKYAK CNGFVVRKDV  60
VVRNVSGMII TRRFLCNREG ERDQKHLTRV DRKRDHRVVT RINCEAHLRI HYNEERLRWV  120
VTSFEVSHNH ELISSTHIHL FLAYRGMTDA DKAQIDSLHS TGMQTCHRMG HMVANKGGYE  180
AVGFIKKYLY NYFGKKTIVD IKDSDVVASL SYLCGKAGLD HMLYAKYTIG R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.16e-87protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3NMH61e-109A0A2K3NMH6_TRIPR; Heme-binding protein 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-22FAR1-related sequence 5