PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23940
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 504aa    MW: 57044.1 Da    PI: 8.7368
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23940genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-10212245538
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                                k  rr+++NReAAr+sR+RKka+i++Le    +L
  Tp57577_TGAC_v2_mRNA23940 212 KTLRRLAQNREAARKSRLRKKAYIQQLESSRIKL 245
                                7789***********************9855444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-8206254No hitNo description
SMARTSM003387.5E-8208294IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.301210254IPR004827Basic-leucine zipper domain
PfamPF001708.6E-8212248IPR004827Basic-leucine zipper domain
CDDcd147084.66E-21212264No hitNo description
SuperFamilySSF579595.95E-7213256No hitNo description
PROSITE patternPS000360215230IPR004827Basic-leucine zipper domain
PfamPF141449.8E-28303377IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAASSVKNLN QTTTQLEPLP PQHHQNHHFH HQQHQQQQQQ QQHHQNNQIS FGMMQSSSSL  60
SVPGSSYINN KDSGAYDLGE LDQALFLYLN GQNDPTSVHE QKQNSSSSGM RPPTLNIFPS  120
QPMYVEPSSS NSKASMELIS SETSGSKRGS EAPSMELTNS RKEIASGSQQ PKPVKARTQN  180
HILNKYQRER NNHGKGPTSS SEHEGPKTPD PKTLRRLAQN REAARKSRLR KKAYIQQLES  240
SRIKLNQMEQ ELQRARNQGM FFGGGAILGG EQGLPISMNG ISSEAAMFDV EYARWLEEHH  300
RLVCELRAAI QEHIHENDLR IFVDKFLQQI DQVLHLKSLV AKSDIFHLVS GMWVTPAERC  360
FMWIGGFKPS ELIKIIVSQI EPVTEQQIMG IYGLQQSTQQ GEDALSQGLE ALNQSLSETI  420
TSESLSYPPN MNNYMDQMSR AMNKLSTLES FVREADNLRH QTIHRLNQIL TTRQAARCFL  480
AMAEYFHRLR TLSSLWLARP RQE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1578911e-80AC157891.3 Medicago truncatula chromosome 7 clone mte1-1i2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493558.10.0bZIP transcription factor TGA10-like isoform X1
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA2Q4V10.0A2Q4V1_MEDTR; cAMP response element binding (CREB) protein
STRINGXP_004493558.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-163bZIP family protein