PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23958
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 258aa    MW: 29988.6 Da    PI: 10.3179
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23958genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-104391147
                               HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               l++++ +++G g+Wk+I++++  ++t  q+ s+ qky
  Tp57577_TGAC_v2_mRNA23958  4 LFLQGLEKYGRGNWKKISKHVV-TKTHTQVASHAQKY 39
                               89********************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.101144IPR017930Myb domain
CDDcd001679.86E-7340No hitNo description
TIGRFAMsTIGR015572.3E-12343IPR006447Myb domain, plants
SuperFamilySSF466891.64E-11345IPR009057Homeodomain-like
PfamPF002491.1E-8439IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-6438IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MCRLFLQGLE KYGRGNWKKI SKHVVTKTHT QVASHAQKYF LRQDDAMKKR KRTSIHDITE  60
WNENVQPLVY KDYNSTPPPP PNVEMHQIHD TTELNGNFHP LLYKDYNSTP TPNVEMHQIH  120
DIIEWNGNSH SSPPPSSLHA ASALPLHFRR NLRRPQRKSH SRYLLTGGHG RTHITGCLTQ  180
RIPXXXXXXX XXXADTLKLC SQLSTEMKTR LPPSISTPPE RWGPWLMQKV EWWGVGNVYL  240
DREEQWSLSS QRMMRKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23958
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2055925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.16e-20MYB family protein