PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24101
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WOX
Protein Properties Length: 219aa    MW: 25308.4 Da    PI: 9.913
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24101genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-201271357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++t+eql +Leel+++  r+psa+++++++++l    +++ ++V++WFqN++a++++
  Tp57577_TGAC_v2_mRNA24101 12 SRWSPTTEQLMILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 71
                               7*****************99*************************************996 PP
2Wus_type_Homeobox1184.2e-381172364
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                               ++RW+Pt+eQ++iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk
  Tp57577_TGAC_v2_mRNA24101 11 SSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 72
                               79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.576772IPR001356Homeobox domain
SuperFamilySSF466892.48E-11774IPR009057Homeodomain-like
SMARTSM003893.4E-4976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-81271IPR009057Homeodomain-like
PfamPF000466.1E-181271IPR001356Homeobox domain
CDDcd000863.76E-41372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRHTIMSPPG SSRWSPTTEQ LMILEELYRS GIRTPSASQI QQITTHLSFY GRIEGKNVFY  60
WFQNHKARDR QKLRRKLNKQ LQLQQQQQQQ QQQQQLQVHH YHQLNHDNMI SNHFVGSTFG  120
YPFGSNAQDF SFFNSPSFLF QGPVAATANT SQGAMNCKWI NGYNNHQSLV EKKDIALSNY  180
GTWTLMDNVN HEPKTSCCTK PLKTLDLFPL STTRIKED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0169100.0KM016910.1 Medicago truncatula LOOSE-FLOWER (LOOSE-FLOWER) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623058.11e-116WUSCHEL-related homeobox 3
TrEMBLA0A2K3P6351e-159A0A2K3P635_TRIPR; WUSCHEL-related homeobox 3-like protein
STRINGAES792761e-115(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-35WOX family protein