PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24162

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 271aa MW: 31221.3 Da PI: 7.8874

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24162	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.2	2.1e-42	15	147	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknrat 78 ++pG+rF Pt+eel+++yL++ +eg++ + +vi+ v+iy+++P++Lp+ + +++++w+fF++r++++ +g r++r t Tp57577_TGAC_v2_mRNA24162 15 MAPGYRFYPTEEELISFYLHNMLEGDQkkYMICSVIPVVNIYDYNPSQLPQisgeASMSDKEQWFFFIPRQESEVRGGRPRRLT 98 579*******************99944334467**********9656643334667****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++gyWkatg+ ++v+s++++++g+k+t+vfy grap+g+ktdW m+ey+ Tp57577_TGAC_v2_mRNA24162 99 TTGYWKATGSPNHVYSSDNRVIGMKRTMVFYCGRAPNGKKTDWKMNEYK 147 **********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.01E-45	11	177	IPR003441	NAC domain
PROSITE profile	PS51005	45.775	15	177	IPR003441	NAC domain
Pfam	PF02365	1.4E-21	17	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MFGQKKKEEK KMENMAPGYR FYPTEEELIS FYLHNMLEGD QKKYMICSVI PVVNIYDYNP 60 SQLPQISGEA SMSDKEQWFF FIPRQESEVR GGRPRRLTTT GYWKATGSPN HVYSSDNRVI 120 GMKRTMVFYC GRAPNGKKTD WKMNEYKAIQ LDHEASSSNK LEPKLRQEFS LCRVYKKSKC 180 LRAFDRRPAP RRVTPLVQNA QEHQKDSICD NDVQMLMGIS ATSSPESSSS IEHHGQPSQE 240 VGEASQMDIS VNYEPLLDWE SVNWFLESGQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	14	177	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	14	177	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	14	177	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	14	177	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	14	177	19	168	NAC domain-containing protein 19
3swm_B	2e-31	14	177	19	168	NAC domain-containing protein 19
3swm_C	2e-31	14	177	19	168	NAC domain-containing protein 19
3swm_D	2e-31	14	177	19	168	NAC domain-containing protein 19
3swp_A	2e-31	14	177	19	168	NAC domain-containing protein 19
3swp_B	2e-31	14	177	19	168	NAC domain-containing protein 19
3swp_C	2e-31	14	177	19	168	NAC domain-containing protein 19
3swp_D	2e-31	14	177	19	168	NAC domain-containing protein 19
4dul_A	1e-31	14	177	16	165	NAC domain-containing protein 19
4dul_B	1e-31	14	177	16	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24162

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013450122.1	1e-156	NAC domain-containing protein 90
TrEMBL	A0A072UEA7	1e-154	A0A072UEA7_MEDTR; NAC transcription factor-like protein
STRING	XP_004494211.1	1e-129	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-65	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24162