PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24173

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 159aa MW: 18407.2 Da PI: 10.3049

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24173	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.8	6.5e-12	7	53	40	91
FAR1 40 kreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 k k++++++++r+ ++gC+a+l++k++ +gkw v+++ ++HnHel+p Tp57577_TGAC_v2_mRNA24173 7 K-----KRESTAQNPRPCLKVGCEASLRIKRNCEGKWIVHNFIKNHNHELFP 53 3.....333566799***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-9	8	53	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
LHTRYGKKRE STAQNPRPCL KVGCEASLRI KRNCEGKWIV HNFIKNHNHE LFPAYAHYFP 60 CHRGIKRNCT LFYRGINKVQ KHTIETLQHV GVRRTKIYAS MAKQYGGYEN IGCLEKDIGN 120 GNHLDKSRRL ELEKKIQEEN VGVFYAHASR KSKILLCN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24173

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024636633.1	1e-64	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_024642307.1	2e-65	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2K3NBU0	4e-59	A0A2K3NBU0_TRIPR; Protein far-red impaired response 1-like (Fragment)
STRING	AES71367	1e-61	(Medicago truncatula)
STRING	AES76124	1e-61	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF27905	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-25	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24173