PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24207

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 92aa MW: 10563.7 Da PI: 10.6277

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24207	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.3	1.8e-32	12	62	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Tp57577_TGAC_v2_mRNA24207 12 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 62 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.417	4	64	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.6E-41	4	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.15E-31	5	68	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.06E-37	5	64	No hit	No description
PROSITE pattern	PS00350	0	6	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-33	6	26	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-27	13	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-33	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-33	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MKRMGRGRVE LKRIENKINR QVTFAKRRNG LLKKAYELSV LCDAEVALII FSTRGKLYEF 60 CSTSKYAIFL SINFSCLFIF LIVKSIILSF C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	2e-20	4	70	1	67	MEF2 CHIMERA
6bz1_B	2e-20	4	70	1	67	MEF2 CHIMERA
6bz1_C	2e-20	4	70	1	67	MEF2 CHIMERA
6bz1_D	2e-20	4	70	1	67	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24207

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137823	5e-85	AC137823.45 Medicago truncatula clone mth2-14c17, complete sequence.
GenBank	AC146650	5e-85	AC146650.13 Medicago truncatula clone mth2-14j5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021745295.1	2e-36	agamous-like MADS-box protein AGL9 homolog isoform X1
Refseq	XP_022850778.1	8e-38	MADS-box protein EJ2-like
Refseq	XP_028059218.1	1e-36	MADS-box protein EJ2-like
Swissprot	Q8LLR2	1e-36	MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBL	A0A151RCR0	8e-38	A0A151RCR0_CAJCA; Agamous-like MADS-box protein AGL9 isogeny
STRING	Aquca_002_00913.1	3e-36	(Aquilegia coerulea)
STRING	cassava4.1_033922m	2e-36	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	4e-38	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24207

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]