PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24308
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 495aa    MW: 55580.2 Da    PI: 7.1803
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24308genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.79.7e-36471941128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                                lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r
  Tp57577_TGAC_v2_mRNA24308  47 LPAGVKFDPTDQELI-EHLEAKVESKNMKSHPlidefilTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRR 128
                                799************.99*********5553344444434777756**********.555666799****************** PP

                        NAM  77 a.............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                +               + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Tp57577_TGAC_v2_mRNA24308 129 KiqteecdlqgtssGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 194
                                8789999988854433567************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-3843213IPR003441NAC domain
PROSITE profilePS5100532.4747213IPR003441NAC domain
PfamPF023656.0E-1648194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MMNNKMSNVS SSDLIDSKLE EHQSCGSKHC PRCGHKFDQG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVES KNMKSHPLID EFILTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTEECDLQGT SSGGETRWHK TGKTRPVMVN GKQKGCKKIL VLYTNFGKNR  180
KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSDNNNNHRI GATIATTGEG  240
SGGGEASNNY GRRDSGSGSS SSKEIVTHNH SHGGHIHRDE MSAVVGVNPL TSFTNAALDI  300
QHLKSDHFGF LPFRKSTFDE VGIGEGSSAR EMQASGGSCD QEQQQQHVVV HHHQQHQQQH  360
QHQHHQQHEI HAHQQINANT AFHISRPSNP ISTIISPPPL HHTTSIILDD NSYHVSTIML  420
QQNENFQQHQ QQHHKLGGGR SASGLEEVIM GCTSTSSDTI KEESSIRNQQ EAEWLKYSSY  480
WPVDPHDNPN HHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1624390.0AC162439.20 Medicago truncatula clone mth2-175g14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630687.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_013447302.10.0NAC domain-containing protein 75 isoform X2
RefseqXP_024629659.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_024629660.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_024629661.10.0NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F81e-179NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A072TUY20.0A0A072TUY2_MEDTR; NAC transcription factor-like protein
TrEMBLG7L7D00.0G7L7D0_MEDTR; NAC transcription factor-like protein
STRINGAET051630.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-135NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]