PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24381

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 196aa MW: 21583.9 Da PI: 5.5914

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24381	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H Tp57577_TGAC_v2_mRNA24381 29 YECNFCKRGFSNAQALGGHMNIH 51 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.05E-7	26	56	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.1E-5	27	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	29	56	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MESDQCDQGG GSGGDDKDGL KQVTNLRSYE CNFCKRGFSN AQALGGHMNI HRKDKAKLKQ 60 QSSNLEQGNS SDQDLNKLLP IFLSSSNIVL PQKQDQHVPS RSEEILVIDH TRQQLPLFSE 120 SPTKIEMQIQ QGGQIHQREI TTTTATTVTA TTTTITQEAL LLSNDQDSSL ELDLELRLGS 180 EPHDSSKPTG TRKFF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24381

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456154.1	1e-66	transcriptional regulator SUPERMAN
TrEMBL	A0A2K3L2L5	1e-100	A0A2K3L2L5_TRIPR; Transcriptional regulator TAC1-like protein
STRING	AES88925	9e-62	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3335	31	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	5e-17	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24381