PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24410
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 630aa    MW: 72525.9 Da    PI: 5.6123
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24410genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.32.8e-1102526261373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lLl c +a+ ++d+++a++lL+++++++sp gd+ qR+a+yf+ +++arl++ ++++    ++ +t++ + +e l+a+++ 
  Tp57577_TGAC_v2_mRNA24410 252 LRNLLLLCSQALYANDNRNANELLKTIRQHSSPFGDASQRVAHYFADGIEARLVGDGTGTQTFYSSPSTKRITAAEFLKAYQVH 335
                                6899***************************************************999999888888888889*********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                +   P+ kf++l aN++I++ ++++e++HiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p +g   +e++eetg+rLa
  Tp57577_TGAC_v2_mRNA24410 336 FISPPFKKFAYLFANKMIMKVAKKAETLHIIDFGILYGFQWPLLIKYLSNREGGPPKLRITGIEFPLPGfrPTERIEETGRRLA 419
                                ******************************************************************99999************* PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                ++++++ vpfe+nv++++++e++++e+L+++++E++aVn++ + ++lldes +++s+r+ vL+l+++++P++++++  + ++ns
  Tp57577_TGAC_v2_mRNA24410 420 NYCKRFSVPFEYNVIASRNWEEIRVEDLKIESNEVIAVNCMTRFKNLLDESIEVNSPRNGVLHLIRKINPDIFTLSVINGSYNS 503
                                **************9999****************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F++rf eal ++sa++d ++a +pre+e+r+++Ere++gre++nvv ceg er+er et++ W+ r ++aGFk++pl+++ +
  Tp57577_TGAC_v2_mRNA24410 504 PFFATRFKEALFHFSAIYDLFDAVIPRENEWRTMIEREIIGREVMNVVGCEGLERVERPETYKLWQVRNTKAGFKQLPLDSELM 587
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                ++ ++ l++ + + +  +e+++++++gWk+r L++ ++W
  Tp57577_TGAC_v2_mRNA24410 588 AKFRTKLKQWYHRDFDFDEDNNWMLQGWKGRILYASTCW 626
                                ***********999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.034226607IPR005202Transcription factor GRAS
PfamPF035149.8E-108252626IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
LQSDIRLLFL NNHMDYSNCD YEFQQGSMED TDFSETIKFI TQILMEENFD QRPFYDPLSL  60
QITQKSFFDA LSPNQHPLDF HNSDQRISTS DSSTKPLSPD TPVSDLGTSV SDGLVDLDSS  120
ITNLLAQNIF SNADSVSQFK RGFEEANKFL PPQPQLLTSL ESSNFNMVEE KENSIVLKGR  180
KNHDREEDEE ERRNNKQSAI GGVVDEDELS EMFDKALLNV ENDCLPNEKL PSTNGAKARP  240
KKRNSKNERV DLRNLLLLCS QALYANDNRN ANELLKTIRQ HSSPFGDASQ RVAHYFADGI  300
EARLVGDGTG TQTFYSSPST KRITAAEFLK AYQVHFISPP FKKFAYLFAN KMIMKVAKKA  360
ETLHIIDFGI LYGFQWPLLI KYLSNREGGP PKLRITGIEF PLPGFRPTER IEETGRRLAN  420
YCKRFSVPFE YNVIASRNWE EIRVEDLKIE SNEVIAVNCM TRFKNLLDES IEVNSPRNGV  480
LHLIRKINPD IFTLSVINGS YNSPFFATRF KEALFHFSAI YDLFDAVIPR ENEWRTMIER  540
EIIGREVMNV VGCEGLERVE RPETYKLWQV RNTKAGFKQL PLDSELMAKF RTKLKQWYHR  600
DFDFDEDNNW MLQGWKGRIL YASTCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-512356281379Protein SCARECROW
5b3h_D9e-512356281379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606667.10.0scarecrow-like protein 14
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLG7JUT40.0G7JUT4_MEDTR; GRAS family transcription factor
STRINGAES888640.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein