PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24487

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 179aa MW: 19859.5 Da PI: 8.5671

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24487	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.8	3.1e-17	65	149	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +Y +YA+++GF ++k +sk+ ++g + t+ Cs+ gk ++ k+ ++++ t+t+Cka+l+ +dg+ +v+++ leH Tp57577_TGAC_v2_mRNA24487 65 YYMNYARHMGFGISKISSKNG-DDG-KKYFTLACSRAGKYVSNPKN---VLKPNPITKTQCKARLNACICSDGTVVVSSVILEH 143 8***********9998877.444.6889********9999...899**************************** PP FAR1 86 nHelap 91 nHel+p Tp57577_TGAC_v2_mRNA24487 144 NHELSP 149 **86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-14	65	149	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
LSPSIVASYS LLKLSVQEIS KSPSREGENK ESEIYDDKLD SNIVCEEEAP RTAMTFSSEE 60 EVTLYYMNYA RHMGFGISKI SSKNGDDGKK YFTLACSRAG KYVSNPKNVL KPNPITKTQC 120 KARLNACICS DGTVVVSSVI LEHNHELSPT KARYFRCNKN LGSHIKRRLE LNDQAGIN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24487

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT963108	2e-73	CT963108.2 Medicago truncatula chromosome 5 clone mth4-37c5, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024642129.1	1e-68	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2K3N9Z9	9e-82	A0A2K3N9Z9_TRIPR; Protein FAR1-related sequence 6-like (Fragment)
STRING	XP_004496070.1	2e-57	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	7e-16	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24487