PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2449
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 290aa    MW: 33614.8 Da    PI: 10.3286
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2449genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.2e-3050100151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                               k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey++
  Tp57577_TGAC_v2_mRNA2449  50 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIT 100
                               569**********************************************86 PP
2K-box68.52.3e-23117210695
                     K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                               g   l+ +++e++ ++l+kLk+ +++L+r++Rh++Ge   +L++Ls+++L++Le+++++s+ kiR++K +++++ +++ +kk ++
  Tp57577_TGAC_v2_mRNA2449 117 GDIdLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEggmELDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRS 201
                               33359******************************995556******************************************** PP

                     K-box  87 lqeenkaLr 95 
                               l++ n +L 
  Tp57577_TGAC_v2_mRNA2449 202 LEQMNGNLL 210
                               *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-4142101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.46942102IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-3443137IPR002100Transcription factor, MADS-box
CDDcd002652.19E-3743118No hitNo description
PRINTSPR004048.2E-274464IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004498IPR002100Transcription factor, MADS-box
PfamPF003194.9E-255298IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-276479IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-2779100IPR002100Transcription factor, MADS-box
PfamPF014864.6E-18124210IPR002487Transcription factor, K-box
PROSITE profilePS5129713.859126219IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MFSLHSNPTF SFHSIQHISI LGNSLHFMTH HSGKRRRSRL KMGRGKIEIK LIENPTNRQV  60
TYSKRRNGIF KKAHELSVLC DAKVSLIMFS KNNKMHEYIT PGLSTKKIID QYQKTLGDID  120
LWRSHYEKML ENLKKLKDIN HKLRRQIRHR IGEGGMELDD LSFQQLRSLE EDMNSSIAKI  180
RERKFHVIKT RTDTCRKKVR SLEQMNGNLL LELIVNVFCF TFVNGIPNKK EKCVIHPQFL  240
FHDEGDEESA VALANGASTL YSFCQHHSQM NLPHHHGGEG FKNDDLRLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-1542103162MEF2 CHIMERA
6byy_B9e-1542103162MEF2 CHIMERA
6byy_C9e-1542103162MEF2 CHIMERA
6byy_D9e-1542103162MEF2 CHIMERA
6bz1_A1e-1442112169MEF2 CHIMERA
6bz1_B1e-1442112169MEF2 CHIMERA
6bz1_C1e-1442112169MEF2 CHIMERA
6bz1_D1e-1442112169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4120970.0JN412097.1 Medicago truncatula MADS-box transcription factor TM6 (TM6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453542.11e-164floral homeotic protein DEFICIENS isoform X1
SwissprotQ003J26e-94TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2K3N4691e-165A0A2K3N469_TRIPR; MADS box transcription factor TM6
STRINGAES950591e-163(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]