PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24536

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 229aa MW: 25675.7 Da PI: 6.1224

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24536	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.9	2.3e-29	140	198	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YY+C+ ++C vkk+ver++ed ++v +tYeg Hnhe Tp57577_TGAC_v2_mRNA24536 140 MDDGYKWRKYGKKSVKNSPNPRNYYKCSGERCGVKKRVERDREDSSYVLTTYEGVHNHE 198 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-31	127	200	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	132	200	IPR003657	WRKY domain
PROSITE profile	PS50811	29.735	135	200	IPR003657	WRKY domain
SMART	SM00774	6.0E-32	140	199	IPR003657	WRKY domain
Pfam	PF03106	8.1E-23	141	198	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDISYFGNPN ASNPYHHYNK NNNIAPSSSS DFINFSDYLV LDDVVFVDNN NNINNQEYYS 60 SWSQSSETEQ SSDKAASSST TTTAADVVIN QGLISDETSI NNNNTTTTTT IKRKNGGIKE 120 NTVEVSPRIT FRTRSQLEIM DDGYKWRKYG KKSVKNSPNP RNYYKCSGER CGVKKRVERD 180 REDSSYVLTT YEGVHNHESP CTSYYTSPVS SNLVYSDQWT SANSSSSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-24	128	200	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24536

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003602498.2	1e-88	probable WRKY transcription factor 51
Swissprot	Q93WU9	2e-39	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2K3M630	1e-109	A0A2K3M630_TRIPR; WRKY transcription factor (Fragment)
STRING	XP_004502873.1	2e-71	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-39	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24536

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]