PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24678
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 236aa    MW: 25749.5 Da    PI: 7.6898
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24678genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.4e-312103197
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg+
  Tp57577_TGAC_v2_mRNA24678   2 SCNGCRVLRKGCSETCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGL 85 
                                6*********************************************************************************** PP

                     DUF260  80 ilklqqqleqlkaelall 97 
                                +++++++++q+++e++l+
  Tp57577_TGAC_v2_mRNA24678  86 LWTGNWHVCQAAVETVLR 103
                                ************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7411107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGVLRPL PELTLMDAPP  120
VAADEASEAE DGGVDAIWRI RDPNPNFRFT SSRSNNKVSS GVKRRRSEEF VKVPPATNLD  180
LRLTPIFLQK EMENRLPGSP SMNSEESVTT TACLETGIAD RLAHGGERKV LNLFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608484.11e-147LOB domain-containing protein 38
SwissprotQ9SZE83e-84LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A2K3PQT01e-172A0A2K3PQT0_TRIPR; LOB domain-containing protein
STRINGAES906811e-147(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-81LOB domain-containing protein 39