PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24813
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 82aa    MW: 9628.81 Da    PI: 6.2358
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24813genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66.1e-134375134
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                               +g+WT+eEd ll+++v+ +G g+W+++ar  g +
  Tp57577_TGAC_v2_mRNA24813 43 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAG-N 75
                               79****************************99.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9553881IPR017930Myb domain
SuperFamilySSF466894.35E-104174IPR009057Homeodomain-like
SMARTSM007170.00444280IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-124276IPR009057Homeodomain-like
PfamPF002493.2E-114376IPR001005SANT/Myb domain
CDDcd001671.25E-84575No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
LPTQINFIQT HTNFDTFNFY MYYRGVMAGQ FGHGIMEEEL WRKGPWTAEE DRLLIEYVRV  60
HGEGRWNSVA RLAGNQQPNF F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590181.21e-28transcription factor MYB24
TrEMBLA0A392MMA75e-31A0A392MMA7_9FABA; Myb family transcription factor family protein (Fragment)
STRINGAES604322e-27(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2785933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-20myb domain protein 79