PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24820
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 346aa    MW: 41041.7 Da    PI: 5.3509
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24820genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.2e-1737128198
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ffkv++++ +  + r+ +p  fa+   +k +     +l+d++gr W vk+  r  +++ ++ +GWk+F ++n L+e+Df+vF++
  Tp57577_TGAC_v2_mRNA24820  37 FFKVFLTEKH--TERMLIPIAFAKLVRLKRRVMPYFILRDRRGRDWHVKV--RPIGRKLYFDDGWKRFGEDNSLEENDFLVFTH 116
                                8899955555..5569*******8887776666689**************..******************************** PP

                                -SSSEE..EEEEE- CS
                         B3  85 dgrsefelvvkvfr 98 
                                ++++ f  ++k+f+
  Tp57577_TGAC_v2_mRNA24820 117 IENNVF--KFKIFE 128
                                999999..888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-2032129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1933129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-1635127No hitNo description
PROSITE profilePS5086313.43735130IPR003340B3 DNA binding domain
PfamPF023621.5E-1537128IPR003340B3 DNA binding domain
SMARTSM010191.2E-1437130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MTCLYKKKQM MLTKSPSFVD HRDNQIMTNT TKEFPDFFKV FLTEKHTERM LIPIAFAKLV  60
RLKRRVMPYF ILRDRRGRDW HVKVRPIGRK LYFDDGWKRF GEDNSLEEND FLVFTHIENN  120
VFKFKIFELS SMCEKIKEMD VEEENNMMED REEVELDDDD TNEYDDDNMM AKEEEDDDEE  180
AYKGFGRSEH QHCRTYKDRS IGSSSAVPKL EDDEIDAKMY IREGSPFFFA KHQLYRPNQL  240
HFPKSVIKDF CFCFSKHINL VCCHCKDVQA NEIAAYHHVL PQMSATHIEK RGEICNWSDG  300
RVYVKGWADF CTMSNITEND RCLCEIVLRE DGTIEMLMVH IVNVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467138.11e-126B3 domain-containing protein REM21 isoform X1
RefseqXP_024631064.11e-126B3 domain-containing protein REM21 isoform X1
TrEMBLA0A2K3M0A91e-177A0A2K3M0A9_TRIPR; B3 domain-containing protein (Fragment)
STRINGXP_004497762.11e-122(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-11B3 family protein