PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24826

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 213aa MW: 24977.9 Da PI: 9.4023

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24826	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	26	70	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++ Tp57577_TGAC_v2_mRNA24826 26 RGQITPQEESIILDLHARWGNR-WSTIARNLP-GRTDNEIKNYWRTH 70 7888****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.426	1	20	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.4E-10	6	32	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.35E-21	6	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.048	21	75	IPR017930	Myb domain
SMART	SM00717	4.1E-15	25	73	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-14	26	70	IPR001005	SANT/Myb domain
CDD	cd00167	3.19E-11	30	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.8E-20	33	71	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
LLTGLRRNGK SCRLRWVNYL RPDLKRGQIT PQEESIILDL HARWGNRWST IARNLPGRTD 60 NEIKNYWRTH FKKKAKNPSD AAEKAKNRFL RKQLFHQQQQ QLQQVQQQQQ QQLQFNLDMK 120 DVVSLFEENN INNHRVPYIS QTRQEMFNMC PNTTEEQSYF MFNGNSSVQD SSADDVLWDD 180 GLWNLDDVHG NFSVANATNK TGLYNLVTPN YC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-17	7	75	40	108	B-MYB
1gv2_A	6e-17	7	75	37	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-16	7	75	91	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-16	7	75	91	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	1e-16	7	75	60	128	MYB TRANSFORMING PROTEIN
1mse_C	6e-17	7	75	37	105	C-Myb DNA-Binding Domain
1msf_C	6e-17	7	75	37	105	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24826

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497798.1	1e-118	transcription factor MYB24-like
TrEMBL	A0A2K3NFQ6	1e-146	A0A2K3NFQ6_TRIPR; Transcription factor MYB 21-like protein (Fragment)
STRING	XP_004497798.1	1e-117	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1182	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13480.1	1e-55	myb domain protein 79

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24826