PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24921

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HB-other

Protein Properties

Length: 170aa MW: 20014.5 Da PI: 9.064

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24921	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.1e-20	40	95	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++l L rq+k+WFqNrR+++k Tp57577_TGAC_v2_mRNA24921 40 KKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMK 95 678899***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.97E-21	18	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-22	26	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	37	97	IPR001356	Homeobox domain
SMART	SM00389	2.8E-17	38	101	IPR001356	Homeobox domain
Pfam	PF00046	9.9E-18	40	95	IPR001356	Homeobox domain
CDD	cd00086	7.40E-14	40	98	No hit	No description
PROSITE pattern	PS00027	0	72	95	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MKLVDQKRTM EYHSGGSGSP GDHHHHHHHH DGSSDSQRRK KRYHRHTANQ IQRLEAMFKE 60 CPHPDEKQRL QLSRELALAP RQIKFWFQNR RTQMKAQHER ADNCQLRAEN DKIRCENIAI 120 REALKNVICP SCGGPPINDD CYFDEQKLRI ENAQLKEEVT KIYQLNFNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24921

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003549189.1	1e-94	homeobox-leucine zipper protein HDG11
Refseq	XP_014624636.1	1e-94	homeobox-leucine zipper protein HDG11
Refseq	XP_028206078.1	1e-94	homeobox-leucine zipper protein HDG11-like
Refseq	XP_028206079.1	1e-94	homeobox-leucine zipper protein HDG11-like
Swissprot	Q69T58	8e-76	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A445GLM0	3e-93	A0A445GLM0_GLYSO; Homeobox-leucine zipper protein HDG11 isoform A
TrEMBL	I1MQL8	3e-93	I1MQL8_SOYBN; Uncharacterized protein
STRING	GLYMA16G34350.1	5e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1026	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	3e-73	homeodomain GLABROUS 11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24921