PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24928
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 73aa    MW: 8444.45 Da    PI: 8.9815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07446344
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                               +WT+   +l+ +a +++  +   +W+ +a+ +g  ++ +++ks++
  Tp57577_TGAC_v2_mRNA24928  4 SWTARQNKLFEQALALYDREtpdRWHNVAKVVG--KSVEDVKSHY 46
                               6*****************88************8..9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129313.167154IPR017884SANT domain
Gene3DG3DSA:1.10.10.605.2E-4357IPR009057Homeodomain-like
CDDcd001672.22E-5450No hitNo description
PfamPF002492.1E-5446IPR001005SANT/Myb domain
SuperFamilySSF466895.8E-12457IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MATSWTARQN KLFEQALALY DRETPDRWHN VAKVVGKSVE DVKSHYEILK EDVQSIEHGR  60
VPFPRYKTNT NN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-265721179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24928
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1627877e-87AC162787.39 Medicago truncatula chromosome 8 clone mth2-192c6, complete sequence.
GenBankBT1465707e-87BT146570.1 Medicago truncatula clone JCVI-FLMt-10N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629426.15e-46protein RADIALIS-like 1
SwissprotQ1A1737e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K3MX343e-47A0A2K3MX34_TRIPR; MYB transcription factor MYB 164
STRINGAET039022e-45(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-30RAD-like 6