PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24946
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YB
Protein Properties Length: 686aa    MW: 77441.1 Da    PI: 8.3845
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24946genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB95.44.9e-3056142591
                      NF-YB   5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                                ++ lP  n++ im+k lP + kis  ak++vq c s fis +t++a+++c+ e r t+ ++d+lwa+ tlGf++y + l++ylk
  Tp57577_TGAC_v2_mRNA24946  56 KNTLPFKNITDIMRKSLPPKIKISYGAKKMVQICSSMFISKITKKANERCKSESRITMGANDILWAMDTLGFNNYFDCLNLYLK 139
                                5689******************************************************************************** PP

                      NF-YB  89 kyr 91 
                                +yr
  Tp57577_TGAC_v2_mRNA24946 140 RYR 142
                                **9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.1E-2856143IPR009072Histone-fold
SuperFamilySSF471135.53E-2157142IPR009072Histone-fold
PfamPF008082.4E-1358122IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PfamPF001391.0E-9198264IPR001220Legume lectin domain
Gene3DG3DSA:2.60.120.2001.6E-31198368IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498992.89E-15198380IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561126.74E-79347658IPR011009Protein kinase-like domain
PROSITE profilePS5001139.679363638IPR000719Protein kinase domain
SMARTSM002206.0E-42363638IPR000719Protein kinase domain
PfamPF000692.6E-50363631IPR000719Protein kinase domain
PROSITE patternPS001070369392IPR017441Protein kinase, ATP binding site
CDDcd140661.41E-97369635No hitNo description
Gene3DG3DSA:3.30.200.201.1E-24369446No hitNo description
Gene3DG3DSA:1.10.510.101.7E-41447635No hitNo description
PROSITE patternPS001080485497IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0030246Molecular Functioncarbohydrate binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MKRKYPLFHN GQKPSSSYYG SSMLQQTGAD TNTRAPTTLM NPRNDVIVPQ LIMRNKNTLP  60
FKNITDIMRK SLPPKIKISY GAKKMVQICS SMFISKITKK ANERCKSESR ITMGANDILW  120
AMDTLGFNNY FDCLNLYLKR YRYESYFCHS TGYSRALIDV GTNSSMNPNP IFEMVEAVDM  180
DKFWAGVDNL DGPFDGQDKR QNNLSVYLSY ENSSFSKPEK PVLSFDVDLS EYFNEIELIY  240
VGFLGSAEGS TELQQIMNWS FESFQFLVFN QTQNKNSTFH HVGYQYEDIP ASNSTRKGHG  300
KRFMIGFCVA IVGPAFFFVL LLVLGYVSFR KWSILKKLKK SESSIGCPKE FGYKELKFAT  360
KGFHASRIIG NGSFGTVYKA LFVSSGTVAA VKRSRHSHEG KTEFLSELSI IAGLRHKNLV  420
QLLGWCVEKS ELLLVYEFMV NGSLDKLLYK EFECGVLLSW IQRVNIVAGL ASVLAYLHQE  480
CEQRVIHRDI KTANILLDGN LNPRLGDFGL AKLMDHDMSP VSTLTAGTMG YLAPEYLQYG  540
KATDKTDVFS FGVVVLEVAC GRRPIEKEGQ EMVNLVDFVW GLYSQGKLIE AVDKRLNGEF  600
NEDEMKKMLL LGLSCANPNS DERPSMRRVL QILNNEALPL VVPKVKPCLS FSSGLLLSFD  660
EIVSDFDERF SSNQYSCKIQ IEPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cth_A2e-863496433301Concanavalin A-like lectin protein kinase family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. {ECO:0000269|PubMed:25083911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460061.10.0probable L-type lectin-domain containing receptor kinase S.7
SwissprotQ9FHG40.0LRKS7_ARATH; Probable L-type lectin-domain containing receptor kinase S.7
TrEMBLA0A2Z6NK760.0A0A2Z6NK76_TRISU; Uncharacterized protein
STRINGXP_004516112.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.31e-24nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Bouwmeester K,Govers F
    Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles.
    J. Exp. Bot., 2009. 60(15): p. 4383-96
    [PMID:19773388]
  2. Wang Y,Bouwmeester K,Beseh P,Shan W,Govers F
    Phenotypic analyses of Arabidopsis T-DNA insertion lines and expression profiling reveal that multiple L-type lectin receptor kinases are involved in plant immunity.
    Mol. Plant Microbe Interact., 2014. 27(12): p. 1390-402
    [PMID:25083911]
  3. Eggermont L,Verstraeten B,Van Damme EJM
    Genome-Wide Screening for Lectin Motifs in Arabidopsis thaliana.
    Plant Genome, 2018.
    [PMID:28724081]