PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24979

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 164aa MW: 18785.5 Da PI: 10.1062

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24979	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83.6	2.2e-26	12	66	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r Wt +LHe+Fve+v++LGG++kA P++il+lm+ +gLt+ hvk HL kYR+ Tp57577_TGAC_v2_mRNA24979 12 KTRAIWTRDLHEKFVECVNRLGGADKAMPSAILRLMESDGLTIFHVKYHLKKYRI 66 6899**************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.7E-13	11	68	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-22	12	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-18	12	66	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-6	17	65	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-16	107	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MFASSGSSVS FKTRAIWTRD LHEKFVECVN RLGGADKAMP SAILRLMESD GLTIFHVKYH 60 LKKYRISMAE PAHVDLNSKQ SVNKFSGKSD KRKTHVENVN LDVKSGVQIR EALQLQLDDQ 120 RRLHEQLENQ RYLQLQIEEQ GRQLKMMFDK QHQTCSGQLK SAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-18	12	67	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-18	12	67	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-18	12	67	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-18	12	67	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-18	12	67	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-18	12	67	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-18	12	67	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-18	12	67	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-18	12	67	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-18	12	67	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-18	12	67	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-18	12	67	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KRKTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24979

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013467656.1	8e-67	myb family transcription factor PHL5
Swissprot	Q0WVU3	5e-52	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A2K3PFC9	1e-73	A0A2K3PFC9_TRIPR; MYB-like hth transcriptional regulator family protein
STRING	XP_004497904.1	6e-64	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-46	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24979