PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25023
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 175aa    MW: 19962.4 Da    PI: 9.3957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25023genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-174594255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Tp57577_TGAC_v2_mRNA25023 45 PYRGIRKRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 94
                               69****999.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103222.48445102IPR001471AP2/ERF domain
SMARTSM003803.8E-3645108IPR001471AP2/ERF domain
CDDcd000184.20E-2846104No hitNo description
Gene3DG3DSA:3.30.730.104.5E-3046103IPR001471AP2/ERF domain
PfamPF008477.3E-114694IPR001471AP2/ERF domain
PRINTSPR003678.5E-124657IPR001471AP2/ERF domain
PRINTSPR003678.5E-1284104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLNLKERAEP IMEEVRDCCS TIIRNRGSKN NNPQEKHHKQ KQEKPYRGIR KRKWGKWVAE  60
IREPNKRSRI WLGSYTTPVA AARAYDTAVF YLRGPTARLN FPELLFQDDD EHNDDGSIQQ  120
GNMSADLIRK KATKVGARVD ALQTALQASS ISTSAQFNSD VKPDLNEFPE PEDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1544102463ATERF1
3gcc_A3e-1544102463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1227281e-150AC122728.32 Medicago truncatula clone mth2-22l4, complete sequence.
GenBankBT1475251e-150BT147525.1 Medicago truncatula clone JCVI-FLMt-6F9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603078.11e-100ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC306e-52RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2K3L6011e-119A0A2K3L601_TRIPR; Ethylene-responsive transcription factor rap2-1-like protein
STRINGAES733291e-100(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.13e-52related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]