PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25041
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 278aa    MW: 30696.5 Da    PI: 10.0968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25041genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08191233754
                                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++ r RR+ri +++  L++++P       +K++ a++L +Av+Y+k L
  Tp57577_TGAC_v2_mRNA25041 191 IAARHRRERISEKIRILQRMVPGG-----TKMDTASMLDEAVHYVKFL 233
                                56799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-13185245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.69E-11186238No hitNo description
SuperFamilySSF474599.29E-14188245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6192233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDSNQLKPSS SSSEDQIDMM LMMMMQLPEL SSSNGNNNIN QFPPSDQQLY GSTPSSTNTR  60
PLVDLIDNPP NQIPNWSSTS SFTTHLPSQS PNTNTNTNTI SFTNNNMFQQ LQQASPTLMF  120
SNSNNDVVGT NTNHYVGGAA SASPSEKRNS MAAMREMIFR IAAMQPIYID PESVKPPKRR  180
NVKISKDPQS IAARHRRERI SEKIRILQRM VPGGTKMDTA SMLDEAVHYV KFLKTQLKSL  240
QERASVANSN RTVAGSGIGF PVSLPKPYQG RNVDHYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120431e-164CU012043.5 M.truncatula DNA sequence from clone MTH2-63O12 on chromosome 3, complete sequence.
GenBankCU1796971e-164CU179697.4 M.truncatula DNA sequence from clone MTH2-63I19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603053.11e-146transcription factor HEC2
TrEMBLA0A2K3NFF50.0A0A2K3NFF5_TRIPR; Transcription factor HEC1-like protein
STRINGAES733041e-145(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-48bHLH family protein