PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA25077

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 236aa MW: 25871.5 Da PI: 8.8609

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA25077	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	36	96	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s+ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+PvGgg+rk k+s Tp57577_TGAC_v2_mRNA25077 36 EQEQLKCPRCESNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGTRKVTKRS 96 57899***************************************************88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-26	31	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.4E-33	38	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
LKVEISTEKQ LKFLSLSHIK MQDPTTFQPM KPNFPEQEQL KCPRCESNNT KFCYYNNYNL 60 SQPRHFCKNC KRYWTKGGSL RNIPVGGGTR KVTKRSSNSK RSTTTTTTPS SSSSAQVSSV 120 SESDPTQIKN NPVEENQRVF GGGSFSSLLA SSERFGNLFE GLNSNGSGLK MVQMGEFGEN 180 LNCDPVGNSG HNNPSGRDGE SEIFHGLQNG GNSSCWNGNH GWSDLAIYTP SSSYQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA25077

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024627596.1	1e-113	dof zinc finger protein DOF1.7
Swissprot	O82155	2e-43	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2K3LPU9	1e-113	A0A2K3LPU9_TRIPR; Dof zinc finger protein (Fragment)
STRING	AES85778	1e-112	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-36	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA25077

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]