PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25108
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 336aa    MW: 38073.1 Da    PI: 4.9391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.82.5e-24137197259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D ++WrKYGqKe+ +s+fprsY+rCt +   gC+++k+v+  +e+p++ +itY g H+++
  Tp57577_TGAC_v2_mRNA25108 137 GDNHSWRKYGQKEILNSQFPRSYFRCTRKheqGCKATKQVQLIEENPEMYQITYIGYHTCK 197
                                599************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-23129197IPR003657WRKY domain
PROSITE profilePS5081117.89131199IPR003657WRKY domain
SuperFamilySSF1182901.24E-23133197IPR003657WRKY domain
SMARTSM007742.9E-34136198IPR003657WRKY domain
PfamPF031061.2E-23138197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSIVLHESAS SKMKEILIKE LIQGKEYATQ LKFMFENHVD SNGSASVKEL VCNVLRTFSQ  60
TISVMTSSEA CNFDEVAQNH NSGEDGSLVA ASCNDDVKSE DSSESKKRLL PTTKDRRGSY  120
KRRKTDETRT IVSKTIGDNH SWRKYGQKEI LNSQFPRSYF RCTRKHEQGC KATKQVQLIE  180
ENPEMYQITY IGYHTCKASL QTPQMVAFSA GTNWDSFTVN PHSKEVLVNY DQQVPPISSS  240
ERPIVKQEYL NNDDNTTPQR SDLTDNLLDE HNLWSDFKDL ELPKPSTLSF NNVAPSDNNA  300
DNVYSCTESQ NLEIDFGSFS DFSNDLVYFD ESQLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20130197269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105123KKRLLPTTKDRRGSYKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461494.11e-157probable WRKY transcription factor 70
TrEMBLA0A2Z6NW040.0A0A2Z6NW04_TRISU; Uncharacterized protein
STRINGXP_004502820.11e-131(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-44WRKY DNA-binding protein 54