PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25115
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 412aa    MW: 46641.5 Da    PI: 6.2002
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25115genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.85.4e-161213510128
                        NAM  10 tdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                                td+el++ +L +k+++ +l+    i e d++ +  +Pw++ +    +++ + k++y Fs  +kk+at++r  r++  g+W+   
  Tp57577_TGAC_v2_mRNA25115  12 TDDELLKPFLYNKIHNLPLPNYINILEQDLFGTikNPWQIWEefeaSHSYSGKDLYVFSILRKKSATSTRVVRTIGMGTWEGED 95 
                                8*****************999888*****9987779****752333333366799**************************999 PP

                        NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                + k++++k +++l g+kk   f k  + + +   W++hey+l
  Tp57577_TGAC_v2_mRNA25115  96 TGKSIFAKdTNQLLGMKKRYRFEK--SDTYQDGGWIVHEYSL 135
                                999**99967778*********85..4455699*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.0273156IPR003441NAC domain
PfamPF023659.2E-1011135IPR003441NAC domain
SuperFamilySSF1019413.01E-1912155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MALNSSARKD FTDDELLKPF LYNKIHNLPL PNYINILEQD LFGTIKNPWQ IWEEFEASHS  60
YSGKDLYVFS ILRKKSATST RVVRTIGMGT WEGEDTGKSI FAKDTNQLLG MKKRYRFEKS  120
DTYQDGGWIV HEYSLDKSLI SNPSAINYVL CRFRKNSKLG LQNTGTRIHH QPNSHIPNCS  180
VVPRKNPKMN NVGQSQRKTV AVPPRSAAVA VPPRAPVAVP PRAAATTIPG NNITLLRKYI  240
IYEEPRKESN TTNVVNTNTN SQSKEEKGVE NIWQEPFIIG LQAIANSENN STWLGENIDQ  300
NPRNQLDSVN NKTEAVKITN ETERKFNKEE HCAMNKEDDG DIIIINGDDD LIMSDLIMSN  360
EEEGGVTMSW PELFAQELLK NNKGCLIEED VSMLSNDFYK DLLFENNNNI K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25115
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590172.11e-121NAC domain-containing protein 30
TrEMBLA0A2K3NKE00.0A0A2K3NKE0_TRIPR; NAC domain-containing protein (Fragment)
STRINGAES604231e-120(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-12NAC-domain protein 101