PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25139
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21048.2 Da    PI: 5.1817
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25139genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.7e-132667647
                               HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                     SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                               + + q tfs+   g++ KA ELSvLC+a+ a+i++ ++++ly
  Tp57577_TGAC_v2_mRNA25139 26 SNKSQMTFSNCTLGLFNKATELSVLCNAKTALIVALPNNELY 67
                               456799**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-41272IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.5121373IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-51535IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-121983IPR002100Transcription factor, MADS-box
PfamPF003191.3E-112667IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-53550IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-55071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEITMQQNLI YTRKRKFGEI MKGKKSNKSQ MTFSNCTLGL FNKATELSVL CNAKTALIVA  60
LPNNELYICG YPNYDAVIQQ FLTGKDTIEE TEKKKQEKIV ETLRIEYETI GDKLKKLMEE  120
EKNLQTINDE AEKSGSISSC WWNDPIDDMD LQSLEEFKIS LEKLRLNLGS AIDEKKLMST  180
LRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116DKLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189143.15e-48agamous-like MADS-box protein AGL62
TrEMBLA0A2K3PIR51e-107A0A2K3PIR5_TRIPR; Agamous-like mads-box protein agl62-like
STRINGAET019096e-47(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-15AGAMOUS-like 62