PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25218
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 255aa    MW: 29199.6 Da    PI: 8.5942
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25218genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-18166253196
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+k +++s+v+   +l lp +f++eh  k   + ++tl de+g++ + ++    k+ +  l++GW++F+ a++L +gD+++F+l
  Tp57577_TGAC_v2_mRNA25218 166 FIKSMLQSHVTGGFWLGLPVHFCKEHLPK--HDEEMTLIDEDGEESRTTY--LAKKTG--LSGGWRGFAIAHNLVDGDTLIFEL 243
                                89************************433..3458***************..555444..9*********************** PP

                                -SSSEE..EEEE CS
                         B3  85 dgrsefelvvkv 96 
                                ++r+ f  +v++
  Tp57577_TGAC_v2_mRNA25218 244 VKRTAF--KVMI 253
                                *99999..6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-22158254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-24159254IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-24164254No hitNo description
SMARTSM010191.8E-20166252IPR003340B3 DNA binding domain
PfamPF023621.2E-15166253IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28166254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVAAAAAAAS YEESRRKRME ENKKRMEALN LHQLSQSFHK SSSPSVSKPS PSKPRTRTIH  60
KELVVVRRSS RVANLPTPIY KEVKFLLIYL EIEFQGIFLF SNFTHTDIIL LWIELTFFFC  120
VCVCRGGYNK YRDYSKRVYA SDEAREEALE KAEKLQSDLD SDHPIFIKSM LQSHVTGGFW  180
LGLPVHFCKE HLPKHDEEMT LIDEDGEESR TTYLAKKTGL SGGWRGFAIA HNLVDGDTLI  240
FELVKRTAFK VMIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25218
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501577.11e-112B3 domain-containing protein At5g42700-like
TrEMBLA0A2Z6NES71e-111A0A2Z6NES7_TRISU; Uncharacterized protein
STRINGXP_004501577.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-51B3 family protein