PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25232
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 239aa    MW: 27384.6 Da    PI: 6.7795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25232genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-172575155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               s++ GVr++  +g+W+AeI+d s+   + r +lg++ taeeAa+a+++a+  l+g
  Tp57577_TGAC_v2_mRNA25232 25 SKFVGVRQRA-SGKWAAEIKDTSK---NIRMWLGTYKTAEEAARAYDEAACLLRG 75
                               79*****999.7*********544...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-312582No hitNo description
SuperFamilySSF541713.86E-192584IPR016177DNA-binding domain
PfamPF008475.0E-122575IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-272683IPR001471AP2/ERF domain
PROSITE profilePS5103219.3882683IPR001471AP2/ERF domain
SMARTSM003802.1E-322689IPR001471AP2/ERF domain
PRINTSPR003676.7E-72738IPR001471AP2/ERF domain
PRINTSPR003676.7E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDMEHNKQKS NGDEHSEKLV LKNRSKFVGV RQRASGKWAA EIKDTSKNIR MWLGTYKTAE  60
EAARAYDEAA CLLRGSNTRT NFSITHSIPS NSPISLKLKN LLHRKSISNQ HQNKSTTTAS  120
CFQGAPIDNS IMVMENENNS SCSSEESKSL FWVQNQVSEY NPYYGVDMNM MNCSLGLTQN  180
TLQFDYSWPL PQQRINELTI PKDNMNVYGM DEFYVENTYE SKYEYDVNYP LSHLFCFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-152784361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-152784664ATERF1
3gcc_A6e-152784664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25232
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520530.0AC152053.34 Medicago truncatula clone mth2-35e5, complete sequence.
GenBankAC1712670.0AC171267.17 Medicago truncatula clone mth2-17i7, complete sequence.
GenBankAC2313420.0AC231342.7 Medicago truncatula clone mth2-33p5, complete sequence.
GenBankEU0388040.0EU038804.1 Medicago truncatula ERN3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629734.21e-133ethylene-responsive transcription factor RAP2-11
SwissprotA9Y0K91e-134ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLA0A2K3NZV61e-179A0A2K3NZV6_TRIPR; Ethylene-responsive transcription factor rap2-11-like protein
STRINGAET042101e-133(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-28related to AP2 11
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]