PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25233
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20398.4 Da    PI: 8.5906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25233genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF755.7e-242167349
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                + ++n+qvtfskRr+g++KKA+EL+vLCd+ +a+++fs+ +kly +
  Tp57577_TGAC_v2_mRNA25233 21 LDKQTNKQVTFSKRRQGLFKKASELCVLCDVHAAIVVFSPADKLYCF 67
                               6789*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-311170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.5531171IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-271283IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-211333IPR002100Transcription factor, MADS-box
PfamPF003194.2E-232367IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-213348IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-214869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNMENQRKKT SGRKKIEIKK LDKQTNKQVT FSKRRQGLFK KASELCVLCD VHAAIVVFSP  60
ADKLYCFGEP NTDAILNSYI RGTTEFESSK LARNSQNYEE YNKQYEEALK MLEMEKKKLA  120
DAENLAKFCN TFGWWNDSID DMSSDQLEQF MVSIYELKRK LIEKADEHVM KLHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-161288278Myocyte-specific enhancer factor 2B
1tqe_Q4e-161288278Myocyte-specific enhancer factor 2B
1tqe_R4e-161288278Myocyte-specific enhancer factor 2B
1tqe_S4e-161288278Myocyte-specific enhancer factor 2B
6c9l_A4e-161288278Myocyte-specific enhancer factor 2B
6c9l_B4e-161288278Myocyte-specific enhancer factor 2B
6c9l_C4e-161288278Myocyte-specific enhancer factor 2B
6c9l_D4e-161288278Myocyte-specific enhancer factor 2B
6c9l_E4e-161288278Myocyte-specific enhancer factor 2B
6c9l_F4e-161288278Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25233
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743573e-32AC174357.6 Medicago truncatula chromosome 8 clone mth2-26c10, complete sequence.
GenBankBT1425423e-32BT142542.1 Medicago truncatula clone JCVI-FLMt-2F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465623.13e-92agamous-like MADS-box protein AGL62
TrEMBLA0A2K3NXV41e-125A0A2K3NXV4_TRIPR; Agamous-like mads-box protein agl62-like
STRINGAES844166e-91(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.12e-27AGAMOUS-like 23