PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25304
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 291aa    MW: 33016.8 Da    PI: 9.5561
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25304genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.5e-224491249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               +  n+s  qvtfskRr g++KKA+ELS+LC+a+va++ifs+  k++ +
  Tp57577_TGAC_v2_mRNA25304 44 KMTNDSHMQVTFSKRRSGLFKKASELSTLCGADVALVIFSPGKKVFSF 91
                               56799************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-323594IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.4273595IPR002100Transcription factor, MADS-box
CDDcd002653.35E-3636104No hitNo description
SuperFamilySSF554551.96E-2836109IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-193757IPR002100Transcription factor, MADS-box
PfamPF003198.3E-244591IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-195772IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-197293IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MNVTLTNWFF QIVKFSSLFS FLFFDSAMST GRKGQGRKKI EIKKMTNDSH MQVTFSKRRS  60
GLFKKASELS TLCGADVALV IFSPGKKVFS FGHPNVDTVI DRYLSLLPSQ NNGTERFIEA  120
HRNANVRELN SRLTQLNDAL ENEKRRMDEL SHVNDMACPF DGMDFNQLVS LKNAFENLKK  180
RIPDHANRLV IQGAPNQTMP FYVGNGSFSN MFVHHQPIPQ PGQMFPEQPF QPIPQPGQMF  240
LEQPFQPIPH PGHMFPGQPF QPIPHPDQMF LAQPFQEPMG GEGFGPPRFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-1536103168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B2e-1536103168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C2e-1536103168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D2e-1536103168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A3e-1536120186Myocyte-specific enhancer factor 2A
3kov_B3e-1536120186Myocyte-specific enhancer factor 2A
3kov_I3e-1536120186Myocyte-specific enhancer factor 2A
3kov_J3e-1536120186Myocyte-specific enhancer factor 2A
3mu6_A2e-1536103168Myocyte-specific enhancer factor 2A
3mu6_B2e-1536103168Myocyte-specific enhancer factor 2A
3mu6_C2e-1536103168Myocyte-specific enhancer factor 2A
3mu6_D2e-1536103168Myocyte-specific enhancer factor 2A
3p57_A3e-1536120186Myocyte-specific enhancer factor 2A
3p57_B3e-1536120186Myocyte-specific enhancer factor 2A
3p57_C3e-1536120186Myocyte-specific enhancer factor 2A
3p57_D3e-1536120186Myocyte-specific enhancer factor 2A
3p57_I3e-1536120186Myocyte-specific enhancer factor 2A
3p57_J3e-1536120186Myocyte-specific enhancer factor 2A
6bz1_A3e-1536103269MEF2 CHIMERA
6bz1_B3e-1536103269MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469942.16e-92agamous-like MADS-box protein AGL62
SwissprotQ9FKK24e-49AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K3MVG21e-176A0A2K3MVG2_TRIPR; MADS-box transcription factor
STRINGAET025834e-91(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-51AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]