PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25360
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 281aa    MW: 32065.8 Da    PI: 9.3583
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25360genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.5e-18171205135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Tp57577_TGAC_v2_mRNA25360 171 CLHCMTDKTPQWRTGPKGPKTLCNACGVRYKSGRL 205
                                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.4E-685261IPR016679Transcription factor, GATA, plant
SMARTSM004012.3E-16165215IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.281165201IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-15166229No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14167202IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.65E-12170217No hitNo description
PfamPF003201.1E-15171205IPR000679Zinc finger, GATA-type
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
LSVDTRCRHY FNCTSLKRNN TSHCRCIQDV VIISIDDDLA ELEWLSNIVE ESFSNEDLQK  60
MQLISGMKVQ NKDEGSREFS QLNRNNPIFN KEVSVPAKAR SKRTRGXXPC DWSSRLLVLS  120
QTTPSSSEPE EQLLIPTPTL PSVTIPKKQP KTAPRRKDNN DGGSGGDGRR CLHCMTDKTP  180
QWRTGPKGPK TLCNACGVRY KSGRLVPEYR PAASPTFVLT KHSNSHRKVL ELRRQKEMLQ  240
AHQHQQNQFL QHQNMMFDMS NGEDYLIHQH VGPDFRQMMQ *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588383.11e-144GATA transcription factor 12
SwissprotP697813e-83GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2K3M8X41e-148A0A2K3M8X4_TRIPR; GATA transcription factor 12-like protein
STRINGAES586341e-144(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-71GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]