PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25790
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 657aa    MW: 75773.2 Da    PI: 7.3358
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25790genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.11.9e-1541126190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fY eYA + GF+ ++++s+k   +gei    + Cs+ g++ ++ +    +++t +e+  +C ak+ vk+e++g w+++k+e +
  Tp57577_TGAC_v2_mRNA25790  41 SFYGEYALKKGFRWKIRTSRKG-SDGEICYLILACSRVGSNVSKVSC---TSKTLPEKVNSCPAKICVKMEENGLWYIKKFEPD 120
                                59***************99997.8999**************998877...899999**************************** PP

                       FAR1  85 HnHela 90 
                                H+He +
  Tp57577_TGAC_v2_mRNA25790 121 HSHETS 126
                                ***965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1341126IPR004330FAR1 DNA binding domain
PfamPF105511.9E-34243337IPR018289MULE transposase domain
PROSITE profilePS509668.741526564IPR007527Zinc finger, SWIM-type
SMARTSM005750.0025539566IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MDSSNNMVDD EVMKVDNIND DDTCWDPATG MCFSCLDEVK SFYGEYALKK GFRWKIRTSR  60
KGSDGEICYL ILACSRVGSN VSKVSCTSKT LPEKVNSCPA KICVKMEENG LWYIKKFEPD  120
HSHETSPTKA KLFKANKKMN LHVKRTIQIN DDVGVRINKA FQSPVKDAGE HGSIPFCDRD  180
VRNYVNKERC AIGKEGGVKA LISYFCQMRE QHSNFFYDID LDVKNVFWAD ARSRATYEYF  240
GDVVTLDTTY LTNKHDMLFL AFVGVNHHGQ STLLGCGLLS GEDTESYVWL FKSWLRCMLG  300
KAPIGIVTDQ CKTMQNAIEL VFPTTRHRWC LWHIMKKVPE KLSRYDEYKR IKSAMKEAVY  360
DTYTTTDFEE KWCSFIDKFE LQHNDWLSGL YNERHKWAPI FVRKYFWAGM STTQRSDSVH  420
AFFDGYIDST TSLNQFVKQY DNALRSRAIE ESEADFNSMD TTIPCGSNSS IEKQFQGEYT  480
HAKFKEVQAE FRSKMNCAAS LNVLEGCFAT YHVLEEVVVG DIPKERVLNV VFNQESHDFN  540
CECSLFEFRG ILCCHVLSVC AQERIKNVPE KYVLTRWNKN IKRKHSFIKS SYDGTELKPQ  600
MVRFEKLCKH FYDIAEVAAK SEDGTKALHE MLRQFNSNLP PMDGTTNKHE TYNEMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1365070.0AC136507.19 Medicago truncatula clone mth2-24o19, complete sequence.
GenBankAC1469410.0AC146941.8 Medicago truncatula clone mth2-133o10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642224.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3PDK20.0A0A2K3PDK2_TRIPR; Protein FAR1-related sequence 6-like
STRINGGLYMA11G13523.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5