PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA25895

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 159aa MW: 18318.8 Da PI: 8.4547

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA25895	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	54	144	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYneY+k++GF +r+++ +ksk +g t+r+f+C keg+r +k++ ++++raetrtgC+a++++++++ gk++v +++ Tp57577_TGAC_v2_mRNA25895 54 DFYNEYSKKMGFGIRREYGNKSKIDGVLTSRRFTCFKEGNRGVDKRD-YLTKEPRAETRTGCQARMVISLDRkIGKYKVVDFVA 136 6****************************************9999.999***************9989****** PP FAR1 84 eHnHelap 91 +HnH l+p Tp57577_TGAC_v2_mRNA25895 137 QHNHMLQP 144 ***986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-22	54	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
LSENMNGSST PIAEGVQQLV NNIQVNIVEH SRESVVNYIP HLEMEFESEV ATYDFYNEYS 60 KKMGFGIRRE YGNKSKIDGV LTSRRFTCFK EGNRGVDKRD YLTKEPRAET RTGCQARMVI 120 SLDRKIGKYK VVDFVAQHNH MLQPNEYVHM LQCHPLLK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA25895

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024633609.1	4e-78	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024633610.1	1e-80	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2K3LRX3	1e-112	A0A2K3LRX3_TRIPR; Protein FAR1-related sequence 5-like
STRING	AES68720	5e-76	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15115	2	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-23	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA25895