PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25923
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 248aa    MW: 28225.4 Da    PI: 5.4919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25923genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-164494155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               + y+GVr +    +Wv+e r+p   +k++r++lg+f tae+Aa+a++ a+++l+g
  Tp57577_TGAC_v2_mRNA25923 44 PVYRGVRKRN-LDKWVCEMREP---NKKTRIWLGTFPTAEMAARAHDVAALALRG 94
                               68*****888.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-124494IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3045104IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-2145104IPR016177DNA-binding domain
PROSITE profilePS5103221.60145102IPR001471AP2/ERF domain
SMARTSM003807.1E-2845108IPR001471AP2/ERF domain
PRINTSPR003672.9E-84657IPR001471AP2/ERF domain
CDDcd000183.42E-2946104No hitNo description
PRINTSPR003672.9E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFISKNSPYS HLISSQDSDG EMRLAASCPK KRAGRKIFKE TRHPVYRGVR KRNLDKWVCE  60
MREPNKKTRI WLGTFPTAEM AARAHDVAAL ALRGRYACLN FADSVWRLPI PATSETKDIQ  120
KAATEAAEAF RPEKTLKTND IETVIAVVAE KELSMFVSEV EEEDAEAFRP EIFLIETVIA  180
VVAAKELNMF VVDVAKEEED DMPDLWRNMV LMSPTHSLEY DYEDIDNFKR SYLTMNRVVT  240
SIIVIVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452564.11e-97dehydration-responsive element-binding protein 1A
TrEMBLA0A2K3PDD01e-145A0A2K3PDD0_TRIPR; Ap2/erf domain-containing transcription factor
STRINGGLYMA09G27180.22e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-51C-repeat-binding factor 4