PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA25931

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 154aa MW: 17987.5 Da PI: 8.8187

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA25931	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.2	6.2e-14	38	106	1	69
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvk 69 kfY+ +A + GFs rk + ++ r++++ ++tf Cs+eg+r+++ + ++ +++++++tr+gC ak v+ Tp57577_TGAC_v2_mRNA25931 38 KFYCWFAIMFGFSFRKGHVIRN-RERHVLQQTFLCSREGFRDSKALNpDDLQHEQKTTTRCGCMAKCIVH 106 6******************9.5556************999866778889999***9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-12	38	106	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MEGELSCENP EATNLDLKRR HLADISKYEF VNLDVAYKFY CWFAIMFGFS FRKGHVIRNR 60 ERHVLQQTFL CSREGFRDSK ALNPDDLQHE QKTTTRCGCM AKCIVHIDII PRRLARKTSA 120 GIEKKKAAAG KQTPTGKEKE RERQWEEEEE TRY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA25931

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3MEL2	6e-34	A0A2K3MEL2_TRIPR; FAR1 DNA-binding domain protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-06	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA25931