PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26185
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 444aa    MW: 51462.2 Da    PI: 8.5579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26185genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-13182235148
                                TSSS-HHHH.......HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEd.......ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g WT eEd        ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA26185 182 KGQWTVEEDglcacknRLLIQLVEQYGLRKWSHIAQMLP-GRIGKQCRERWHNHL 235
                                577888887555555578*********************.*************97 PP
2Myb_DNA-binding54.23.3e-17243283345
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 W++eEd++l++a+ + G++ W+ Ia++++ gRt++++k++w+
  Tp57577_TGAC_v2_mRNA26185 243 IWSEEEDKILIKAHGEIGNK-WAEIAKKLP-GRTENSIKNHWN 283
                                6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-6166223IPR009057Homeodomain-like
PROSITE profilePS5129425.788177239IPR017930Myb domain
SMARTSM007173.8E-12181237IPR001005SANT/Myb domain
PfamPF002493.7E-12182235IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-26183242IPR009057Homeodomain-like
CDDcd001678.13E-14185235No hitNo description
SuperFamilySSF466891.24E-28215295IPR009057Homeodomain-like
PROSITE profilePS5129420.771240290IPR017930Myb domain
SMARTSM007174.4E-16240288IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-21243288IPR009057Homeodomain-like
CDDcd001672.31E-12244286No hitNo description
PfamPF002491.4E-15244283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSMDLETKLT KNYYFKPNMK NHENNPFGGV PSSQGILQDF NHIDKFNVNA SFFNPISGVQ  60
NYVPSYNFTY DVHHDFKPFV ENNSGNGNAY VMDNFLYGNY GLNNFSQRNN QVEMMVTNTN  120
QSNYFPFNIS QETKPLNFGV PDEVSCISPL NYYKRISLNK NNKGYLTSRK TQKVRKRSNL  180
VKGQWTVEED GLCACKNRLL IQLVEQYGLR KWSHIAQMLP GRIGKQCRER WHNHLRPDIK  240
KDIWSEEEDK ILIKAHGEIG NKWAEIAKKL PGRTENSIKN HWNATKRRQH SKRKCRSKYP  300
RGTLLQEYIK SLNLDKNPPK DYRRKSSTNA SVLKNKTNKN TTISAQSQNQ KAEQFCSSDR  360
CLVPSCDFDD VPGFCFDENL FKDGCSIDSL LDDIQCDEIM EEKKHCDNVE IDMPLEIMES  420
MLGVEVKKEM DLIEMVFSDQ RNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-421802892104C-Myb DNA-Binding Domain
1msf_C4e-421802892104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26185
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601252.20.0transcription factor MYB98
SwissprotQ9S7L29e-95MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A396IT830.0A0A396IT83_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES715030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-97myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]