PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26238
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 436aa    MW: 49457 Da    PI: 5.1017
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26238genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.81e-34311212101
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl k+ye+++d+ ++e++swsen+nsf+v++++efa+ +L +yFkh+nf+SF+RQLn+YgF+k+++e+         weF++++
  Tp57577_TGAC_v2_mRNA26238  31 FLVKTYEMVDDSCTDEIVSWSENNNSFIVWNPTEFARLLLRNYFKHNNFSSFIRQLNTYGFRKIHHEQ---------WEFANEY 105
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkk 101
                                F k++k+ll++i+rkk
  Tp57577_TGAC_v2_mRNA26238 106 FVKDQKHLLNNIHRKK 121
                                **************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5827120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.21E-3427120IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3627120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-3031120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTNNLFLFVS FWFIMESSTT GSGGGGNPAP FLVKTYEMVD DSCTDEIVSW SENNNSFIVW  60
NPTEFARLLL RNYFKHNNFS SFIRQLNTYG FRKIHHEQWE FANEYFVKDQ KHLLNNIHRK  120
KPIHSHNNSQ GSHVDPERLA FEEEIEKLSN EKTTIQSNIS NFKQNISTAK LHLEDLQQRL  180
DSMEKRQKNL LNLFERELQN PKFVEQIYQK IESLNLSGHN KKRRFPHVVE NSFVDNDSNF  240
GITEVGNMNI FREDFCSKLN LLSTTSSNED GESTHNKMLC EGELPKETLG FVSGKECHLL  300
SCSPSVNLIS DHADNGACFT FDMDSCLLQG GKLNSSEPMS GESDCDQICC LLSLTMASSP  360
AQDISSQIDC QEIGKSIESR FHTNDHIGAF SNRNLDNVVT SLASSIESPS NDQGIPAAPV  420
KDRVNDLFWS QYLTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-222112019129Heat shock factor protein 1
5d5v_B1e-222112019129Heat shock factor protein 1
5d5v_D1e-222112019129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342484.11e-151heat stress transcription factor A-5-like isoform X1
TrEMBLA0A2Z6P0W50.0A0A2Z6P0W5_TRISU; Uncharacterized protein
STRINGXP_004504369.11e-148(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.12e-94HSF family protein