PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26320
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 379aa    MW: 42360.5 Da    PI: 6.9567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26320genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-08126145626
                                -SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                                C++f++ G Ck Gd+C FaHg
  Tp57577_TGAC_v2_mRNA26320 126 CPDFRK-GSCKKGDSCEFAHG 145
                                ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.732120147IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-6126147IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6126145IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.324155179IPR000571Zinc finger, CCCH-type
SMARTSM0035624155178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSMMLGEPPH RTNPTVHVPQ WPNPTAEIFS PLTANEDYSQ FYLQEALSAL QHYLPEHDDA  60
DSDSEIFPSH ESVDAYSNDH FRMFEFKIRR CARGRSHDWT ECPFAHPGEK ARRRDPRKFQ  120
YSGTSCPDFR KGSCKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCRRR VCFFAHTTEQ  180
LRAPTLQTPR SVNSADSYDG SPLRLGIESS CVKTLPFISS PGSVSPVESP PVSPMTRSLG  240
RSMGSVNVNE MVASIRNLQL DKMKSLPPSW NCQMGSPRFG SPRGPMIRPG FCSLPSTPTQ  300
PRSRSGVNHF DLWDQCCEEE PVMERVESGR DIRVKMFEKL SKENSLGSSD SGMNSGHVDM  360
DGAPDVGWVS ELVSPFLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447300.10.0zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G21e-125C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2K3LAX60.0A0A2K3LAX6_TRIPR; Zinc finger CCCH domain-containing protein 20-like
STRINGXP_004503514.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-124C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]