PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26328
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 1112aa    MW: 122143 Da    PI: 6.8313
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26328genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23136237199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae++        ++++  ++l+ +d++g++W++++iyr++++r++lt+GW+ F + ++L +g
  Tp57577_TGAC_v2_mRNA26328 136 FCKQLTASDTSTHGGFSVPRRAAEKIfppldfsAQPPA--QELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKKLLAG 217
                                99*****************************9544444..48****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++++l+++++r+
  Tp57577_TGAC_v2_mRNA26328 218 DSVLFI--RDEKQQLLLGIRRA 237
                                ******..5688889****997 PP
2Auxin_resp118.26.7e-39262345183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aaha +++s+F+v+YnPras+seFv++++k+ +a++ +++s+GmRf+m+feteds +rr++Gtv+gvsdldpv+W+nS+Wr+L+
  Tp57577_TGAC_v2_mRNA26328 262 AAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYsHQISPGMRFRMMFETEDSGTRRYMGTVTGVSDLDPVNWKNSQWRNLQ 345
                                799*******************************9889********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-42126265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-40128251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-18135227No hitNo description
SMARTSM010197.5E-23136238IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435136238IPR003340B3 DNA binding domain
PfamPF023621.8E-21136237IPR003340B3 DNA binding domain
PfamPF065071.1E-33262345IPR010525Auxin response factor
PROSITE profilePS5174527.9759991083IPR000270PB1 domain
PfamPF023099.2E-710001084IPR033389AUX/IAA domain
SuperFamilySSF542772.06E-610121077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MTTAEEGTSA AVAVAAAPEG GGGGEKNGIN SELWQACAGP LVNLPLAGTH VVYFPQGHSE  60
QVAASLKKDG DVQVPNYSNL PSKLPCILHS LTLHADPDTD EVYARMTLQP VPSFDMDALL  120
RSDITLKSNK TQPEFFCKQL TASDTSTHGG FSVPRRAAEK IFPPLDFSAQ PPAQELVAKD  180
LHGNVWKFRH IYRGQPKRHL LTTGWSLFIS GKKLLAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHASANNS PFTVFYNPRA SPSEFVIPLA KYYRAVYSHQ  300
ISPGMRFRMM FETEDSGTRR YMGTVTGVSD LDPVNWKNSQ WRNLQVGWDE STAGERRSRV  360
SIWEIEPVTA PFFICPPPFI RSKRPRLPGM PDDELFNASN LFKSSMPWLG DDMSMKDPQA  420
FPGMSLAQWM SLQQNPTLAS SLQQNHVPST SGSVLHNLPG ADIAHQLGFS TQQISQPNNV  480
AFNAPGILQT PQQLDHLQKL SSSTSSGLGT VMQPEQHHSR QNLVNQTLPQ SQVQTHVLNP  540
QNVVQANNIL QSQQQSAQNH QLHRSLSQNP LHQQLQQTII GQNQQQNMIR SAMPDHINQQ  600
LPMSDNQIRI QLLQKLQQQQ QTFFAQQSAL QQPAQLIQNQ EQQRQLLDVT HNSRTLTPNQ  660
VFEIPPTLQN SLPGTNSMIH QMTDHSSQNN VQFSHPSKQP KLQHQPQQMQ PDSVSKMSSH  720
VGLPPATTTN HLSASGSSTR TAATGTGPSV VIDDVPSCST SPSTNNCANV LPPMTTSHIL  780
MSTIGDDAAQ SSATILSQNA LETMSSSANV VKFVPPRYEA KPSLNHNQGN FYPQTGLNGG  840
AVQTDCLDTS SSTTSAGLSQ SDTRFHQNDN LLSYNPQSMF CRDNIQNMEV QADARSNIAY  900
GNSMNGQMRM PPNLDSTVTK GTTRSGKDLS NNFSSSGLLG DYENNNDAQP ELSSSLVSQT  960
FGVPDMTFNS IDSTINDSSF LNSGPWAPPP PPHQFQRIRT YTKVYKRGAV GRSIDITRYS  1020
GYEELKHDLA RRFGIEGQLE DRQRIGWKLV YVDHENDVLL VGDDPWEEFV NCVRCIKILS  1080
PQEVQQMSID GDFGNGGLPK QACSSSDGGN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622336645388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26328
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400230.0AC140023.13 Medicago truncatula clone mth2-32h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630611.10.0auxin response factor 19 isoform X2
TrEMBLA0A2K3NLP40.0A0A2K3NLP4_TRIPR; Auxin response factor
STRINGAET050870.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19