PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA26360

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 193aa MW: 22455.7 Da PI: 9.1848

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA26360	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.3	2.3e-27	28	116	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY+eYA++vGF +r+ + ++s+r+g+i r+f C+keg+ + + k r+tra++r gCka++++k +k++kw++tk++++H Tp57577_TGAC_v2_mRNA26360 28 FYDEYARHVGFVMRVMSCRRSERDGRILARRFGCNKEGHCVSIRGKLGPVRKTRASSREGCKAMIHIKYDKSEKWVITKFVKDH 111 9*************************************9999999********************************* PP FAR1 86 nHela 90 nH+l+ Tp57577_TGAC_v2_mRNA26360 112 NHPLV 116 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	28	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
LGSSHHDRAI QEPYEGMEFA SEDAAKIFYD EYARHVGFVM RVMSCRRSER DGRILARRFG 60 CNKEGHCVSI RGKLGPVRKT RASSREGCKA MIHIKYDKSE KWVITKFVKD HNHPLVVSPR 120 EARQTMDEKD KKIQDLTADL RIKKRLCVTY QEQLTSFMKI VEEHSDKLSA RIHHILDNLK 180 EYESIEELLH QT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA26360

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT144425	0.0	BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013458769.1	1e-128	protein FAR1-RELATED SEQUENCE 2
Refseq	XP_024633927.1	1e-128	protein FAR1-RELATED SEQUENCE 2
Swissprot	Q9SZL8	2e-22	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K3PLX7	1e-138	A0A2K3PLX7_TRIPR; FAR-RED impaired response-like protein
STRING	XP_004507548.1	1e-124	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-100	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA26360

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]