PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26380
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 87aa    MW: 10073.9 Da    PI: 9.8704
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26380genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-145812099
                               HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                kfa ++ ++ +  + ++l++ +g++Wev + + +ks ++ ++kG  +F  +n+L +gD++vF+l++++   l+v++fr+
  Tp57577_TGAC_v2_mRNA26380  5 SKFAPKYLKP-N--VPIKLQNCHGEQWEVFCVFYNKSLGMRIRKGFPKFQMDNNLSTGDICVFELIKKEPVVLKVTMFRA 81
                               6778777333.2..459****************99999****************************99999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.701182IPR003340B3 DNA binding domain
CDDcd100179.86E-14180No hitNo description
Gene3DG3DSA:2.40.330.102.4E-14181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.01E-14480IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-12581IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
LNVTSKFAPK YLKPNVPIKL QNCHGEQWEV FCVFYNKSLG MRIRKGFPKF QMDNNLSTGD  60
ICVFELIKKE PVVLKVTMFR AVDYRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640216.14e-33B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A2Z6NIC45e-34A0A2Z6NIC4_TRISU; Uncharacterized protein
TrEMBLA0A2Z6P5U66e-34A0A2Z6P5U6_TRISU; Uncharacterized protein
STRINGAES986033e-32(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-12related to vernalization1 1