PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26391
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 546aa    MW: 62790.2 Da    PI: 8.9899
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26391genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-102092821694
                                EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                         B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                +++p +fa+e+ ++k    +  +l++++g++W+v +i+++k+++ + + kG   F+++n+L  + f vF+l+++   ++vv
  Tp57577_TGAC_v2_mRNA26391 209 VYVPFEFAAEYlKLK----VPFMLQNPQGKQWKVSCIMNNKRSStMRIIKGLPIFARENNLLRRCFYVFELIKT---KPVV 282
                                578999**9996444....559**************9955555548899*********************9984...3344 PP
2B333.85.9e-11455534990
                                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                ++ +++r+++  +fa+++ ++   ++ +++++ +g++We+ +   + +s+++ +++G  eF ++n+L +gD +  +l++++  
  Tp57577_TGAC_v2_mRNA26391 455 STIRHQRMYIHADFAKKYLKP---DVAVKVQNCNGEQWEIDCVPnDYRSSAMRMGRGFTEFLRDNNLSDGDECKVELIKEMPV 534
                                567889************544...468***************76455555699***********************9987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1540162IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.71570163IPR003340B3 DNA binding domain
SMARTSM010193.6E-570163IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-1483162IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-784160IPR003340B3 DNA binding domain
CDDcd100174.64E-886161No hitNo description
Gene3DG3DSA:2.40.330.109.0E-10190284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-9190284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.908194289IPR003340B3 DNA binding domain
SMARTSM010193.9E-4196288IPR003340B3 DNA binding domain
PfamPF023623.7E-8209281IPR003340B3 DNA binding domain
CDDcd100173.03E-6210286No hitNo description
Gene3DG3DSA:2.40.330.102.1E-16308404IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-17309403IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-9310402No hitNo description
PROSITE profilePS5086310.602311404IPR003340B3 DNA binding domain
SMARTSM010197.1E-9312404IPR003340B3 DNA binding domain
PROSITE profilePS508638.529447542IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-11448533IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-12448535IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.4E-6453542IPR003340B3 DNA binding domain
CDDcd100177.40E-10454531No hitNo description
PfamPF023622.9E-8455533IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
LINRLTSLSV SVIIMECAMK HRRRSCVRSS APPEEEEEEE KDSKHFMKAI LPSPFHSKQI  60
WKSHKCVTPL FKFGPIKDEL LLSLQRIPDE FITRFGNELS NVAKITVPDG RQWNMELKKC  120
GRDVFLCNKW QEFAEYYSIS YGCYLDFKYE GNSEFNVVIY DTTSLEISYP SKTPSTNGES  180
NTKDTAFECN PKNPSFRSKY MKAARGPYVY VPFEFAAEYL KLKVPFMLQN PQGKQWKVSC  240
IMNNKRSSTM RIIKGLPIFA RENNLLRRCF YVFELIKTKP VVVLRVTPSP TLRQKNSVPS  300
SAEEEVRESK HFKKAILPSP IHAKQMKIPD NFITIFGNEL NNVAKVTVPD GRVWDIELKK  360
CGENVFFCNK WQQFAEFYSI EYGCYLSFKY EGNSMFSVII VDATSVEIVY PPFKTNGEPK  420
RKCGRPRKKS RVEMNDADDL ASAEDQGSKN PSFTSTIRHQ RMYIHADFAK KYLKPDVAVK  480
VQNCNGEQWE IDCVPNDYRS SAMRMGRGFT EFLRDNNLSD GDECKVELIK EMPVVLKLLS  540
VSPAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26391
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598025.20.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A2K3PD960.0A0A2K3PD96_TRIPR; B3 domain-containing transcription factor vrn1-like protein
STRINGAES682760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-22B3 family protein