PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26419
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 562aa    MW: 64997.7 Da    PI: 9.6229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26419genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-1019109198
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f k+ +ps  ++++ +++p +f++++g++   s   +++ ++gr+W+++l  +k+++ ++l + W+eF++   +  g  + Fk+
  Tp57577_TGAC_v2_mRNA26419  19 FMKAILPSPIHAKQ-IRIPDEFITRFGNE--LSHVAKITVPDGRQWDMEL--KKCGNDIFLCNKWQEFAEYYSISYGCYLDFKY 97 
                                77888888888886.********999855..88899999***********..******************************** PP

                                -SSSEE..EEEEE- CS
                         B3  85 dgrsefelvvkvfr 98 
                                +g+sef  +v +++
  Tp57577_TGAC_v2_mRNA26419  98 EGNSEF--NVVIYD 109
                                **9999..666665 PP
2B340.74.3e-13153229988
                                HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                         B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                 +++ +  ++p +fa ++ +++    +  +l++++g++Wev + ++kk++++ +t+G ++F+++n+L  g +  F+l++++
  Tp57577_TGAC_v2_mRNA26419 153 KSFRDNFAYVPAEFAPKYlKLN----VPFKLQNSQGKQWEVSCVFNKKGKSMRITTGFRKFARDNNLLKGVIYHFELIKSE 229
                                5677788899*****9996544....5699**********************************************99743 PP
3B334.53.6e-11262353199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+k+ +ps  ++++ + +p +f+ ++ g+ e + + +++ ++gr+W+++l  +k+++ +++ ++W++F++   ++ g  + Fk+
  Tp57577_TGAC_v2_mRNA26419 262 FKKAILPSPIHAKQ-IKIPDNFI-TIFGN-ELNNDAKVTVPDGRVWDIEL--KKRDNDVYFCNNWQQFAEFYSIEYGCYLSFKY 340
                                77888888888886.********.55445.36779***************..******************************** PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                +g+s f   v +f++
  Tp57577_TGAC_v2_mRNA26419 341 EGNSMF--SVIIFDA 353
                                *99888..7877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-1812110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-1814110IPR015300DNA-binding pseudobarrel domain
CDDcd100176.62E-1017109No hitNo description
PROSITE profilePS5086310.96918111IPR003340B3 DNA binding domain
SMARTSM010192.8E-819111IPR003340B3 DNA binding domain
PfamPF023621.5E-819108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-13144233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.122145240IPR003340B3 DNA binding domain
SMARTSM010190.0024151238IPR003340B3 DNA binding domain
PfamPF023621.1E-11153230IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-12157234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-9161229No hitNo description
SuperFamilySSF1019361.75E-18259353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-17260354IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.293261354IPR003340B3 DNA binding domain
CDDcd100173.57E-12261352No hitNo description
SMARTSM010191.8E-8262354IPR003340B3 DNA binding domain
PfamPF023622.5E-8264353IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-9477555IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-8481555No hitNo description
SuperFamilySSF1019362.16E-9485555IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.136492557IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MQYRRRRCVR PSEEESKHFM KAILPSPIHA KQIRIPDEFI TRFGNELSHV AKITVPDGRQ  60
WDMELKKCGN DIFLCNKWQE FAEYYSISYG CYLDFKYEGN SEFNVVIYDT TSLEICYPFK  120
TSSTNGKPNI ECPKRAKDAV NGINPKNPSF CSKSFRDNFA YVPAEFAPKY LKLNVPFKLQ  180
NSQGKQWEVS CVFNKKGKSM RITTGFRKFA RDNNLLKGVI YHFELIKSEP VVVLQVTEAH  240
TPWQQKCVRS SEEKGVRGFE HFKKAILPSP IHAKQIKIPD NFITIFGNEL NNDAKVTVPD  300
GRVWDIELKK RDNDVYFCNN WQQFAEFYSI EYGCYLSFKY EGNSMFSVII FDATSVEIVY  360
PPFKTNGEPK RKCGRPRKKS RVEMNDATSV EIVYPFKTPS TDGELNTKCP SPGKRSKVET  420
SKSQGQKLKS MSKHASKRAE IAAIEFKPSY PYFRSKICER RYVVRILIYI LSIVQYVHCG  480
FAAKYLKQNV PIKVQNALGE EWEVFCTPNT FGSSEMRISR GFAYFQRANN LSHGDYCVFE  540
LIQKKPVVLK VTMFRTVDYL D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1242256018146B3 domain-containing transcription factor VRN1
4i1k_B2e-1242256018146B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26419
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598025.20.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLG7IYE40.0G7IYE4_MEDTR; B3 DNA-binding domain protein
STRINGAES682760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-41B3 family protein