PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26501
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 425aa    MW: 46391.2 Da    PI: 8.2564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26501genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-104873126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               ++++ C +++rtG C yG++C+++H+
  Tp57577_TGAC_v2_mRNA26501 48 PGEPDCLYYLRTGMCGYGSNCRYNHP 73
                               5789*********************8 PP
2zf-CCCH37.53.9e-1292116327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++ C +f++tGtCkyG++Ck++H++
  Tp57577_TGAC_v2_mRNA26501  92 QPDCEYFLKTGTCKYGSTCKYHHPK 116
                                789********************96 PP
3zf-CCCH38.22.4e-12139161527
                                --SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                 C++++rtG Ck+G  CkF+H++
  Tp57577_TGAC_v2_mRNA26501 139 SCPYYMRTGACKFGVACKFHHPQ 161
                                6********************97 PP
4zf-CCCH39.87.6e-13275300227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                +++ C++f+ tGtCkyG+ CkF+H++
  Tp57577_TGAC_v2_mRNA26501 275 DQPDCKYFMSTGTCKYGSDCKFHHPK 300
                                6899********************96 PP
5zf-CCCH32.21.8e-10320343326
                                S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                 ++C++++ +G Ck+G++CkF H+
  Tp57577_TGAC_v2_mRNA26501 320 NAICSYYRIYGVCKFGPTCKFDHP 343
                                689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9394775IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-54774IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-74973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-65274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-45373IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42289117IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-6133163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.516134162IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5139161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.68273301IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6273300IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10275300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7278302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-6279300IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169317345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5318343IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-8321343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4322342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MPENRQVLKN AASNPSGDNI EEAIRRLKIN NNRDRDAAAQ SMPYPDRPGE PDCLYYLRTG  60
MCGYGSNCRY NHPANVSLVP QYGEELPERV GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG  120
AAPVVFNTLG LPMRQEEKSC PYYMRTGACK FGVACKFHHP QQQASFGAYP VAASPPSTTV  180
TSSGFPYAGG FPAWSVPRMS YLSGQAIQSY VPPFMPSSQG IMPALSWSNY MGSISPAMPS  240
GFIGSNLVYD YMNPAAGETL SGGQVMNSTL PDRPDQPDCK YFMSTGTCKY GSDCKFHHPK  300
ERIAQTLSVN PLGLPMRPGN AICSYYRIYG VCKFGPTCKF DHPVVAAIPQ NYGLPSPTLS  360
VFDPSLLTSP RRLSTVQPTE TSPSKQSTDK LQQSDTKAAT EDSSKQADTT SSNSRTPSSE  420
SLHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26501
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491091.10.0zinc finger CCCH domain-containing protein 3
TrEMBLA0A2K3PIL70.0A0A2K3PIL7_TRIPR; Zinc finger CCCH domain-containing protein 3-like (Fragment)
STRINGXP_004491091.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-111C3H family protein